applicationexample Chromatinimmunoprecipitation(ChIP).Chromatinimmunoprecipitationwasperformedasdescribed(Bowleretal.(2004),PlantJournal)withmodifications.SonicandIPbufferwerepreparedasdescribed(Kaufmannetal.(2010)),NatureProtocols).Chromatinpelletwassonicatedat4°CwithaDiagenodeBioruptorsetathighintensityfor10min(30secon,30secoffintervals)toobtain250-500bpDNAfragments.Chromatin(20µg)wasimmunoprecipitatedwithaRNAPolIIantibody(2µg/IP)andDynabeads®ProteinG(LifeTechnologies).ReversecorsslinkingandelutionofDNAfragmentswereperformedusingChelex(Biorad)at95°C,10minasdescribed(Rowleyetal.(2013),Methods).Samplewithoutantibodywasusedtodeterminethenonspecificbackgroundpulled-downdirectlybythebeads.RelativeabundanceofregionsofinterestinimmunoprecipitatedDNAwasmeasuredbyreal-timePCR.Redlinesindicatesamplifiedregion.Valuesonthechartsareshownasthemean±SDlevel(%ofinput)ofRNAPolIIonGAPDHgene(A)andMIR168a(B)gene.Datacomesfromthreeindependentexperiments. 新闻动态
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