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Bpsbioscience/Anti–5–caC polyclonal antibody/25201/20 µg188bio精品生物—专注于实验室精品爆款的电商平台 - 蚂蚁淘旗下精选188款生物医学科研用品
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Bpsbioscience/Anti–5–caC polyclonal antibody/25201/20 µg

HostSpecies:Rabbit
Clonality:polyclonal
Background:
Theso-called6thbase,5–hydroxymethylcytosinehasbeendiscoveredin2009.Thefunctionofthisnewmodifiedbaseremainsmostlyunclear,butitiscertainthatthe5–hmCbaseisgeneratedbyenzymaticconversionof5–methylcytosine(5–mC)into5–hydroxymethylcytosinebytheTETfamilyofoxygenases.Earlyreportssuggestedthat5–hmCmayrepresentanintermediateofactivedemethylationinanewpathwaywhichdemethylatesDNA,converting5–mCtocytosine.Recentevidencefuelthehypothesisthat5–hmCrepresentsanintermediate,whichcouldinvolvefurtheroxidationofthehydroxymethylgrouptoaformylorcarboxylgroupfollowedbyeitherdeformylationordecarboxylation.Thecarboxylandformylgroupsof5–formylcytosine(5–fC)and5–carboxylcytosine(5–caC)couldbeenzymaticallyremovedwithoutexcisionofthebase.
Description:
Polyclonalantibodyraisedinrabbitagainst5–Carboxylcytosine(5ca–CMPmonophosphate)conjugatedtoBSA
Synonym(s):
5–Carboxylcytosine
AssayConditions:

Dotblotanalysisusingtheantibodydirectedagainst5-caC
Todemonstratethespecificityoftheantibodyagainst5-caC(Cat.#25201),aDotBlotanalysiswasperformedusingsyntheticoligonucleotidescontainingdifferentmodifiedC-bases(indicatedinred).125and25ngoftherespectiveoligoswereboundtoaStreptavindin-coatedmulti-wellplate.Theantibodywasusedatadilutionof1:1,000.ThebindingofantibodytotheDNAwasmeasuredbyECLchemiluminescence.Figure1showsahighspecificityoftheantibodyforthecarboxylatedcytosine.

Immunofluorescenceassayusingtheantibodydirectedagainst5-caC
293TcellsweretransfectedwitheitherthemouseFLAG-taggedwild-typeTet1(Tet1CD)orthecatalyticallyinactiveFLAG-taggedC-terminaldomainofTet1(Tet1mCD)andstainedwiththeantibodyagainst5-caC(Cat.#25201),diluted1:500,andwithananti-FLAGantibody,followedbyDAPIcounterstaining.

Immunoprecipitationusingtheantibodydirectedagainst5-caC
Immunoprecipitationwasperformedwiththeantibodyagainst5-caC(Cat.#25201)on2µgofJ1ESgenomicDNA,spikedwith1pgofacontrolDNAfragment(approximately700bpfromtheRFP(Ringfingerprotein)gene)containingdifferentcytosinemodifications.ThemCandhmCcontrolDNAwasgeneratedbyPCRwiththecorrespondingnucleotide.ThecaCcontrolfragmentwasobtainedbyinvitromethylationusingM.SssImethyltransferasefollowedbyoxidationwithpurifiedTet2.TheimmunoprecipitatedDNAwassubsequentlyanaysedbyqPCRusingprimersspecificforthecontrolDNAfragmentsandforGAPDH,usedasanegativecontrol.Figure3showstheenrichmentcalculatedastheratiooftherecoveryofthecontrolDNAversustherecoveryoftheGAPDHnegativecontrol. 

Concentration:
20µg
Formulation:
PBS(pH7.4),30%glycerol,0.05%sodiumazide
SpeciesReactivity:
NA
CrossReactivity:
Specificfor5–carboxylcytosine(5–caC).Doesnotreactwith5–mc,5–hmc,unmodifiedcytosine,or5–formylcytosine(5–fC)and5–carboxylcytosine(5–caC)
Purification:
ProteinAaffinitypurified
Immunogen:
nucleotide
Format:
Aqueousbuffersolution
Storage/Stability:

Storeat–80°Cforupto2years.Centrifugeafterfirstthawtomaximizeproductrecovery.Aliquottoavoidrepeatedfreeze/thawcycles.Aliquotsmaybestoredat–20°Cforatleastonemonth.

Application(s):
DB(1:500–1:1000)
IF(1:500)
DNAIP(4µggenomicDNA/IP)
Notes:
Theoptimalantibodyconcentrationshouldbedeterminedbytheend–user.
Warning(s):
Avoidfreeze/thawcycles
ScientificCategory:
Antibodies
ProductType:
Antibody
Datashownislot-specific.Contactusforspecificinformationonotherlots.

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